Information for 15-CGGACCTACT (Motif 21)

A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T
Reverse Opposite:
C G T A A T C G A C G T G T C A A C T G A C T G C A G T A G T C A G T C C T A G
p-value:1e-12
log p-value:-2.805e+01
Information Content per bp:1.845
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets55.4 +/- 27.9bp
Average Position of motif in Background60.5 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGGACCTACT----
TTGACCTANTTATN
 A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGGACCTACT-
-TGACCTARTT
 A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGACCTACT
-TGACCT---
 A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CGGACCTACT-
AAGATCGGAANTNNNA
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGGACCTACT-
-TGACCTTGAT
 A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGGACCTACT------
CNNNGCTACTGTANNN
 A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

ETV4/MA0764.1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGGACCTACT
ACCGGAAGTA--
 A C G T A C G T A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T
C T G A T A G C T G A C A T C G A C T G C T G A G C T A T C A G A G C T C T G A A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CGGACCTACT-----
NNAGTCCCACTCNNNN
 A C G T A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGGACCTACT------
TNNTGCTACTGTNNNN
 A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGGACCTACT
CGGAGC----
 A G T C C T A G A C T G G C T A G T A C G T A C A C G T C G T A A T G C A C G T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T