Information for 5-GCCGCCATGGCGC (Motif 5)

A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C
Reverse Opposite:
A C T G A G T C A T C G T A G C A G T C C G T A C G A T C T A G T A C G G T A C C A T G A T C G T A G C
p-value:1e-14
log p-value:-3.416e+01
Information Content per bp:1.730
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.42%
Number of Background Sequences with motif261.0
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets57.3 +/- 25.3bp
Average Position of motif in Background49.1 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCGCCATGGCGC
NGTTGCCATGGCAA
 A C G T A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCGCCATGGCGC
GTCCGCCATTA---
 A C G T A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATGGCGC
GCCGCCATCTTG-
 A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATGGCGC-
GTTGCCATGGNAAC
 A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCGCCATGGCGC-
KGTTGCCATGGCAAC
 A C G T A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCGCCATGGCGC------
--NNNNTTGGCGCCGANNN
 A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATGGCGC---
GTTGCCATGGCAACCG
 A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCCGCCATGGCGC------
--NNNNTTGGCGCCGANNN
 A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCGCCATGGCGC
GGTTGCCATGGCAA
 A C G T A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

YY1/MA0095.2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATGGCGC
GCNGCCATCTTG-
 A T C G T A G C G T A C C A T G A T G C A G T C G C T A G C A T T C A G A C T G A T G C T C A G T G A C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T