Information for 11-CKCCGCTTMS (Motif 19)

A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C
Reverse Opposite:
A T C G A C T G C T G A C G T A A C T G A T G C C T A G T C A G G T A C A C T G
p-value:1e-7
log p-value:-1.804e+01
Information Content per bp:1.754
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif7.36%
Number of Background Sequences with motif1604.9
Percentage of Background Sequences with motif3.56%
Average Position of motif in Targets44.0 +/- 24.3bp
Average Position of motif in Background48.7 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CKCCGCTTMS
---NGCTN--
 A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CKCCGCTTMS
----GCTTCC
 A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CKCCGCTTMS-
GCTCCGCCCMCY
 A C G T A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C A C G T
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CKCCGCTTMS-
ATCCCCGCCCCTAAAA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C A C G T
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CKCCGCTTMS
----GCTCCG
 A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CKCCGCTTMS
CGCAGCTGCG
 A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PB0202.1_Zfp410_2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CKCCGCTTMS-
TCACCCCGCCCCAAATT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C A C G T
A G C T G A T C G T C A A G T C G A T C A G T C A G T C A C T G T G A C A G T C T G A C A T G C C G A T G C T A G T C A G A C T G C A T

Gabpa/MA0062.2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CKCCGCTTMS--
-NCCACTTCCGG
 A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C A C G T A C G T
A C G T A C T G A G T C A G T C C T G A A G T C C A G T A C G T A G T C G T A C A C T G A T C G

ELK4/MA0076.2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CKCCGCTTMS---
--CCACTTCCGGC
 A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C A C G T A C G T A C G T
A C G T A C G T A T G C A T G C C T G A A G T C C G A T A C G T A G T C A G T C A C T G A T C G A G T C

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CKCCGCTTMS
-ACCACTTAA
 A G T C A C T G A G T C A G T C A T C G A G T C A C G T G A C T T G A C T A G C
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A