Information for 5-TTTACGGCGC (Motif 3)

C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C
Reverse Opposite:
A T C G G A T C C T A G A T G C T G A C T A C G A G C T T C G A G C T A G T C A
p-value:1e-21
log p-value:-5.060e+01
Information Content per bp:1.655
Number of Target Sequences with motif102.0
Percentage of Target Sequences with motif10.52%
Number of Background Sequences with motif1430.0
Percentage of Background Sequences with motif3.45%
Average Position of motif in Targets48.2 +/- 30.3bp
Average Position of motif in Background49.5 +/- 44.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTTACGGCGC-------
AGCTCGGCGCCAAAAGC
 C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTTACGGCGC-------
CCTTCGGCGCCAAAAGG
 C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PH0067.1_Hoxc12/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTTACGGCGC--
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T A C G T A C G T C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTTACGGCGC--
NNNATTTTACGACNNTN
 A C G T A C G T A C G T A C G T A C G T C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTTACGGCGC
DGWTTTATGRCN-
 A C G T A C G T A C G T C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTTACGGCGC--
ANNATTTTACGACNTNA
 A C G T A C G T A C G T A C G T A C G T C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TTTACGGCGC---
-----GGCGCGCT
 C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTTACGGCGC---
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTTACGGCGC--
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A C G T C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTTACGGCGC-----
ATAAAGGCGCGCGAT
 C A G T C G A T A G C T T C G A A T G C A C T G T A C G G A T C C T A G T A G C A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T