Information for 2-CAGAAGGCTT (Motif 4)

A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
Reverse Opposite:
C G T A C G T A C A T G A G T C A G T C A C G T A C G T A G T C A C G T A T C G
p-value:1e-9
log p-value:-2.249e+01
Information Content per bp:1.910
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif9.84%
Number of Background Sequences with motif59.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets55.7 +/- 18.9bp
Average Position of motif in Background56.3 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAGAAGGCTT
AACAGATGGC--
 A C G T A C G T A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAGAAGGCTT
-NGAAGC---
 A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGAAGGCTT
AACAGATGGT--
 A C G T A C G T A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGAAGGCTT
AACAKATGGY--
 A C G T A C G T A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGAAGGCTT
NNATAAGGNN-
 A C G T A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGAAGGCTT--
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAGAAGGCTT-
---NGGGATTA
 A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAGAAGGCTT---
---VRGGATTARN
 A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGAAGGCTT
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGAAGGCTT
DCTCAGCAGG---
 A C G T A C G T A C G T A T G C C G T A A C T G C G T A C G T A A C T G A C T G G A T C A C G T A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T