Information for 1-ATGCAAATAC (Motif 2)

C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C
Reverse Opposite:
A T C G A C G T G T C A A G C T C G A T A C G T A C T G A G T C G T C A C G A T
p-value:1e-9
log p-value:-2.291e+01
Information Content per bp:1.749
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif16.39%
Number of Background Sequences with motif409.8
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets50.7 +/- 32.8bp
Average Position of motif in Background50.2 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATAC
TTATGCAAAT--
 A C G T A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATAC-
ATATGCAAATNNN
 A C G T A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--ATGCAAATAC
ATATGCAAAT--
 A C G T A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATAC
TATGCAAAT--
 A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATAC
TATGCAAAT--
 A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATAC--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATAC--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATAC--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAATAC-
TATGCWAATBAV
 A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---ATGCAAATAC
AATATGCAAATT-
 A C G T A C G T A C G T C G T A A C G T A C T G G T A C G T C A C G T A T C G A A C G T G T C A T A G C
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T