Information for 5-STMCAGAAGGAGAACA (Motif 6)

A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A
Reverse Opposite:
A C G T A T C G A G C T A C G T A G T C A C G T T G A C G T A C C G A T A C G T A G T C C G A T A C T G A C G T G T C A T A C G
p-value:1e-13
log p-value:-3.142e+01
Information Content per bp:1.756
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 17.7bp
Average Position of motif in Background52.5 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:STMCAGAAGGAGAACA----
------NTTNAGAACAATTA
 A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--STMCAGAAGGAGAACA
CCACACAGCAGGAGA---
 A C G T A C G T A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--STMCAGAAGGAGAACA
CCACACAGCAGGAGA---
 A C G T A C G T A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.54
Offset:7
Orientation:forward strand
Alignment:STMCAGAAGGAGAACA--------
-------AGAAGAACAAAGGACTA
 A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:5
Score:0.54
Offset:8
Orientation:forward strand
Alignment:STMCAGAAGGAGAACA------
--------GCAAAACATTACTA
 A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

PB0122.1_Foxk1_2/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:STMCAGAAGGAGAACA---
----CAAACAACAACACCT
 A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.53
Offset:7
Orientation:forward strand
Alignment:STMCAGAAGGAGAACA--------
-------ATAAGAACAAAGGACTA
 A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.53
Offset:7
Orientation:forward strand
Alignment:STMCAGAAGGAGAACA-------
-------TTTAGAACAATAAAAT
 A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:STMCAGAAGGAGAACA
-CACAGCAGGGGG---
 A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--STMCAGAAGGAGAACA
GAGCACAGCAGGACA---
 A C G T A C G T A T G C C A G T T G C A A G T C C G T A C T A G T C G A C G T A A C T G A C T G C G T A C T A G G T C A C T G A A T G C C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T