Information for 20-AKAGCTCTTTATCCCA (Motif 35)

C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
Reverse Opposite:
C G A T A C T G C T A G C T A G T C G A A G C T C G T A C G T A C T G A A C T G G T C A C T A G G A T C G A C T G T C A C G A T
p-value:1e-9
log p-value:-2.086e+01
Information Content per bp:1.700
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.9 +/- 21.1bp
Average Position of motif in Background62.7 +/- 16.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:AKAGCTCTTTATCCCA
-----YCTTTGTTCC-
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AKAGCTCTTTATCCCA
--TGACCTTTGCCCCA
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AKAGCTCTTTATCCCA
AGGVNCCTTTGT----
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AKAGCTCTTTATCCCA
--AGCTCATTAT----
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
A C G T A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AKAGCTCTTTATCCCA-
--TGACCTTTGCCCTAN
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AKAGCTCTTTATCCCA
------CTTAATCCC-
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.54
Offset:7
Orientation:forward strand
Alignment:AKAGCTCTTTATCCCA
-------TTAATCCC-
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AKAGCTCTTTATCCCA--
--ANTCCTTTGTCTNNNN
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A A C G T A C G T
A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AKAGCTCTTTATCCCA--
-TNNTCCTTTGTTCTNNT
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AKAGCTCTTTATCCCA
-----CCWTTGTYYB-
 C G T A A C G T C T G A C A T G A G T C A C G T A G T C A G C T A C G T G A C T T C G A A C G T A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T