Information for 1-CASAGGWGGATTAAAG (Motif 1)

T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G
Reverse Opposite:
G T A C A C G T C G A T A C G T G T C A C G T A G A C T G T A C G T A C C G T A T A G C A G T C C G A T A T G C A C G T A T C G
p-value:1e-16
log p-value:-3.867e+01
Information Content per bp:1.727
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.5 +/- 24.6bp
Average Position of motif in Background69.8 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0122.1_Obox2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CASAGGWGGATTAAAG--
-TGAGGGGGATTAACTAT
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G A C G T A C G T
A C G T C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

PH0126.1_Obox6/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CASAGGWGGATTAAAG
-AAAAACGGATTATTG
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G
A C G T G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CASAGGWGGATTAAAG--
-TTAGAGGGATTAACAAT
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G A C G T A C G T
A C G T G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0123.1_Obox3/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CASAGGWGGATTAAAG--
-TGAGGGGGATTAACTAT
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G A C G T A C G T
A C G T G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CASAGGWGGATTAAAG
---AAGAGGATTAG--
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CASAGGWGGATTAAAG--
-TTAAGGGGATTAACTAC
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G A C G T A C G T
A C G T C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CASAGGWGGATTAAAG
------GGGATTAA--
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CASAGGWGGATTAAAG
------NGGATTAA--
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CASAGGWGGATTAAAG
-----VRGGATTARN-
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CASAGGWGGATTAAAG---
--TAGAGGGATTAAATTTC
 T A G C T G C A T A C G C G T A C T A G A T C G C G A T A C T G A C T G C G T A G C A T A C G T G T C A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C