Information for 5-TCTCTKGCTTGSTGGC (Motif 7)

A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
Reverse Opposite:
C T A G T A G C A G T C C G T A A T G C A G T C G T C A C G T A C T A G A G T C G T C A C G T A A T C G C G T A C A T G C G T A
p-value:1e-10
log p-value:-2.365e+01
Information Content per bp:1.764
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.4 +/- 26.5bp
Average Position of motif in Background68.3 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TCTCTKGCTTGSTGGC-
---CTGGCAGNCTGCCA
 A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCTCTKGCTTGSTGGC
GGTCTGGCAT------
 A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TCTCTKGCTTGSTGGC
NNTNNTGTCTGGNNTNG----
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TCTCTKGCTTGSTGGC-
---TTGGCATGGTGCCA
 A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TCTCTKGCTTGSTGGC---
---TTGGCANNNTGCCAAG
 A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TCTCTKGCTTGSTGGC
GTCTGTGGTTT------
 A C G T A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TCTCTKGCTTGSTGGC
---TTTGATTGATGN-
 A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TCTCTKGCTTGSTGGC
CTGTCTGG---------
 A C G T A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---TCTCTKGCTTGSTGGC
TCTTATCT-----------
 A C G T A C G T A C G T A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
A G C T A G T C A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-TCTCTKGCTTGSTGGC
TTTTATGGCTN------
 A C G T A C G T G A T C A C G T A T G C A C G T A C G T A C T G G A T C C G A T C A G T A C T G A T C G C G A T A C T G A C T G A G T C
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T