Information for 15-AAGCAGACAG (Motif 42)

C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T
p-value:1e-3
log p-value:-7.806e+00
Information Content per bp:1.530
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif22.45%
Number of Background Sequences with motif7300.3
Percentage of Background Sequences with motif14.95%
Average Position of motif in Targets53.0 +/- 26.6bp
Average Position of motif in Background49.8 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:AAGCAGACAG
--CCAGACAG
 C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AAGCAGACAG--
--CCAGACRSVB
 C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAGCAGACAG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AAGCAGACAG
--BCAGACWA
 C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGCAGACAG----
CGAAGCACACAAAATA
 A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGCAGACAG
AAAGTAAACA-
 A C G T C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAGCAGACAG
WAAGTAAAYA-
 A C G T C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGCAGACAG
AAAGTAAACA-
 A C G T C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AAGCAGACAG-
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AAGCAGACAG-
-----CACAGN
 C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C