Information for 14-AACAACTAAT (Motif 41)

G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C G T A C G T
p-value:1e-3
log p-value:-8.737e+00
Information Content per bp:1.957
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 27.0bp
Average Position of motif in Background70.8 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0108.1_Msx3/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AACAACTAAT------
CAAAACCAATTAATTT
 G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AACAACTAAT--
ATAAACAATTAAACA
 A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PH0028.1_En1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AACAACTAAT------
GCGAACTAATTAATGC
 G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

PH0005.1_Barhl1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AACAACTAAT------
AACAACCAATTAATTC
 G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AACAACTAAT----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AACAACTAAT----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AACAACTAAT-
NNNTAACAATTATAN
 A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PB0074.1_Sox8_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AACAACTAAT--
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PH0092.1_Lhx2/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AACAACTAAT--------
-TAAACTAATTAGTGAAC
 G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

PH0008.1_Barx2/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AACAACTAAT------
NANAANTAATTANTTA
 G T C A C G T A A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A