Information for 2-TGAGCHCAGGGCACCC (Motif 2)

C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
Reverse Opposite:
A C T G A C T G A C T G A C G T C T A G A G T C A G T C G T A C A C G T A T C G C A G T A C T G G T A C A C G T A G T C C G T A
p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.795
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.2 +/- 23.3bp
Average Position of motif in Background83.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MTF1/MA0863.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGAGCHCAGGGCACCC
TTTGCACACGGCAC--
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGAGCHCAGGGCACCC
-AAGCACATGG-----
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
A C G T T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TGAGCHCAGGGCACCC
-----NGTGGGCAT--
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGAGCHCAGGGCACCC
----CAAAGGTCAG--
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TGAGCHCAGGGCACCC
-----TNNGGGCAG--
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGAGCHCAGGGCACCC
-GTTGCCATGGCAAC-
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGAGCHCAGGGCACCC
TAGGGCAAAGGTCA---
 A C G T C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TGAGCHCAGGGCACCC------
-----NNNNGGTACCCCCCANN
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGAGCHCAGGGCACCC-
-GTTGCCATGGCAACCG
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C A C G T
A C G T C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TGAGCHCAGGGCACCC
-GTTGCCATGGCAACM
 C G A T T C A G C G T A A C T G A G T C G C T A A T G C C G T A A C T G A C T G A C T G A G T C C G T A G T A C A G T C G T A C
A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C