Information for 1-GVAGATGCCAADGTGT (Motif 1)

A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
Reverse Opposite:
C T G A A G T C C G T A A G T C G C T A A C G T A C G T A C T G A T C G A G T C C T G A A C G T A G T C A C G T A C G T A T G C
p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.837
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 18.1bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT
---CGTGCCAAG----
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GVAGATGCCAADGTGT
-----TGCCAA-----
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT
---GGTGCCAAGT---
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT
----ATGCCAACC---
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT
---WATGCAAATGAG-
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT
-ARGAGGMCAAAATGW
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GVAGATGCCAADGTGT
--ATATGCAAATNNN-
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT
---TATGCWAATBAV-
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT-
-ACTATGCCAACCTACC
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GVAGATGCCAADGTGT
--ATATGCAAAT----
 A T C G T C G A C G T A A C T G C G T A A G C T A C T G A T G C G T A C C G T A G T C A C G A T A C T G C G A T A C T G A G C T
A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T