Information for 10-AATGGATGCC (Motif 32)

C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A C G A T A G T C A G T C C G T A A C G T A C G T
p-value:1e-6
log p-value:-1.384e+01
Information Content per bp:1.963
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.0 +/- 17.4bp
Average Position of motif in Background45.9 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AATGGATGCC
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AATGGATGCC----
-----ATGCCCACC
 C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AATGGATGCC
CAAGATGGCGGC-
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATGGATGCC
ATGATKGATGRC
 A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

VENTX/MA0724.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AATGGATGCC
CTAATCGNT---
 A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AATGGATGCC----
-----ATGCCAACC
 C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AATGGATGCC
TAATGGCGGNC
 A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATGGATGCC
NTAATKGTTT--
 A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATGGATGCC
GTTAATGGCC---
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----AATGGATGCC
VRAACAATGG-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T