Information for 5-CCCCDCAATGACA (Motif 9)

G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A
Reverse Opposite:
C G A T A C T G C A G T G T A C C G T A A G C T A C G T A T C G G C T A A C T G A C T G A C T G A C T G
p-value:1e-10
log p-value:-2.472e+01
Information Content per bp:1.735
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.16%
Number of Background Sequences with motif127.3
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets51.5 +/- 23.8bp
Average Position of motif in Background48.2 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.59
Offset:8
Orientation:forward strand
Alignment:CCCCDCAATGACA---
--------TGTCANYT
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CCCCDCAATGACA-
------RHTGWCAR
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.59
Offset:7
Orientation:forward strand
Alignment:CCCCDCAATGACA-
-------TTGACAG
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCCCDCAATGACA
---GACAATGNN-
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCCCDCAATGACA--
-----CAAGGHCANV
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CCCCDCAATGACA--
-------TTGACAGG
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CCCCDCAATGACA---
------VBTGWCAGCB
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

ZNF143/MA0088.2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCCCDCAATGACA--
TACCCACAATGCATTG
 A C G T G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCCCDCAATGACA
-----NCGTGACN
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A
A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CCCCDCAATGACA
------CATGAC-
 G T A C G T A C A G T C G T A C C G A T A T G C G T C A T C G A A C G T A C T G G C T A T A G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T