Information for 5-GGACTTTGCCCCT (Motif 8)

C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
Reverse Opposite:
G C T A C T A G C T A G C A T G A C T G A T G C G T C A G T C A C T G A T C A G A C G T A G T C G T A C
p-value:1e-16
log p-value:-3.842e+01
Information Content per bp:1.681
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif343.2
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets48.1 +/- 21.1bp
Average Position of motif in Background49.2 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---GGACTTTGCCCCT
ATTGGACTTTGACCCC
 A C G T A C G T A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGACTTTGCCCCT-
TGGACTTTGNNCTCN
 A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGACTTTGCCCCT--
TGGACTTTGNNCTNTG
 A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGACTTTGCCCCT
TGACCTTGACCT-
 C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGACTTTGCCCCT
TGACCTTGACCT-
 C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGACTTTGCCCCT
TGACCTTTGCCCCA
 A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGACTTTGCCCCT
TGACCTTTGCCCTA
 A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GGACTTTGCCCCT
NNATTGGACTTTNGNN--
 A C G T A C G T A C G T A C G T A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGACTTTGCCCCT
NAGGTCANTGACCT-
 A C G T A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGACTTTGCCCCT-
TGACCTTTGCCCTAN
 A C G T C A T G C T A G T C G A A G T C G A C T A C G T A C G T A T C G T G A C G T A C A G T C G A T C C G A T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C