Information for 4-CCAAAGGTCA (Motif 4)

A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A
Reverse Opposite:
A G C T A C T G T C G A G T A C A G T C A G C T A G C T A C G T C A T G T A C G
p-value:1e-22
log p-value:-5.251e+01
Information Content per bp:1.723
Number of Target Sequences with motif132.0
Percentage of Target Sequences with motif15.24%
Number of Background Sequences with motif2636.4
Percentage of Background Sequences with motif5.83%
Average Position of motif in Targets49.8 +/- 23.9bp
Average Position of motif in Background49.5 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CCAAAGGTCA-
-CAAAGGTCAG
 A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--CCAAAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CCAAAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----CCAAAGGTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.85
Offset:-6
Orientation:forward strand
Alignment:------CCAAAGGTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.84
Offset:1
Orientation:forward strand
Alignment:CCAAAGGTCA----
-CAAAGGTCAAGGG
 A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CCAAAGGTCA
ANGNAAAGGTCA
 A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CCAAAGGTCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CCAAAGGTCA
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CCAAAGGTCA
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C G T C A T C G A C T G A A C T G A C T G A G C T T G A C C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A