Information for 6-AAKCAATCGC (Motif 9)

C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
Reverse Opposite:
C T A G A G T C A T C G C T G A A C G T A C G T A C T G G T C A C G A T G C A T
p-value:1e-12
log p-value:-2.942e+01
Information Content per bp:1.776
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif163.3
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets49.7 +/- 28.1bp
Average Position of motif in Background47.7 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AAKCAATCGC
GAACAATGG-
 C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AAKCAATCGC
HNRAATCAAT---
 A C G T A C G T A C G T C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AAKCAATCGC
VRAACAATGG-
 A C G T C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAKCAATCGC---
GAAGATCAATCACTAA
 A C G T A C G T A C G T C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAKCAATCGC
RAACAATGGN
 C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

SRY/MA0084.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAKCAATCGC
GTAAACAAT---
 A C G T A C G T C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAKCAATCGC
NAACAAT---
 C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAKCAATCGC---
GAAGATCAATCACTTA
 A C G T A C G T A C G T C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAKCAATCGC
GAACAATGGN
 C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAKCAATCGC--
CTCACACAATGGCGC
 A C G T A C G T A C G T C G T A G C T A C A G T A G T C G T C A C G T A A G C T A T G C A C T G A G T C A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C