Information for 4-TRTTTACWYA (Motif 3)

C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A
Reverse Opposite:
C A G T C T A G C G A T A C T G A G C T G T C A G T C A T G C A A G T C G T C A
p-value:1e-19
log p-value:-4.585e+01
Information Content per bp:1.700
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif107.4
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets45.0 +/- 20.9bp
Average Position of motif in Background52.4 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TRTTTACWYA
ATATTTACATA
 A C G T C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TRTTTACWYA
CNTGTTTACATA
 A C G T A C G T C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:3
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---TRTTTACWYA--
BSNTGTTTACWYWGN
 A C G T A C G T A C G T C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TRTTTACWYA
ATATTTACATA
 A C G T C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A
C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TRTTTACWYA--
TGTTTACTTAGG
 C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A A C G T A C G T
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

FOXA1/MA0148.3/Jaspar

Match Rank:6
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----TRTTTACWYA-
TCCATGTTTACTTTG
 A C G T A C G T A C G T A C G T C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TRTTTACWYA
TGTTTACTTT
 C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TRTTTACWYA
TGTTTACTTT
 C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:9
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TRTTTACWYA
TRTTTACTTW
 C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A
A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TRTTTACWYA-----
NSTGTTTRCWCAGBNNN
 A C G T A C G T C A G T C T A G A C G T A C G T C A G T C T G A T G A C C G T A G A T C G T C A A C G T A C G T A C G T A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G