Information for 12-CCCTGTTCAAGGA (Motif 14)

A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A G C T A C G T C T A G G T C A C G T A A G T C C T G A A C T G A C T G A C T G
p-value:1e-10
log p-value:-2.479e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.6 +/- 24.0bp
Average Position of motif in Background62.0 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCCTGTTCAAGGA
--CTGTTCCTGG-
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCTGTTCAAGGA--
---AGGTCAAGGTCA
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

STAT1/MA0137.3/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCCTGTTCAAGGA--
----TTTCCAGGAAA
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A

Stat4/MA0518.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCCTGTTCAAGGA-----
----TTTCCAGGAAATGG
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCTGTTCAAGGA
GNCTATAAAAGG-
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCCTGTTCAAGGA--
---AGGTCAAGGTCA
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCCTGTTCAAGGA----
--AAGTTCAAGGTCAGC
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CCCTGTTCAAGGA--
-----NTCAAGGTCA
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCCTGTTCAAGGA
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCCTGTTCAAGGA
-GCTGTG------
 A G T C A G T C A G T C A G C T A C T G A C G T A C G T A G T C G T C A C T G A A C T G A C T G C G T A
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T