Information for 4-TCTCTGTGCAAACAAT (Motif 9)

A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T C G A T A C T G A G C T A C G T C G A T A C T G T A G C C T G A A T G C C T G A A C T G C G T A A C T G C T G A
p-value:1e-10
log p-value:-2.448e+01
Information Content per bp:1.881
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.2 +/- 23.4bp
Average Position of motif in Background78.3 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TCTCTGTGCAAACAAT--
---ATTTGCATACAATGG
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCTCTGTGCAAACAAT
NNNVCTGWGYAAACASN
 A C G T A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.63
Offset:9
Orientation:reverse strand
Alignment:TCTCTGTGCAAACAAT
---------NAACAAT
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TCTCTGTGCAAACAAT
-------GTAAACAAT
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TCTCTGTGCAAACAAT----
----NNTNANAACAATTNNA
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.59
Offset:10
Orientation:reverse strand
Alignment:TCTCTGTGCAAACAAT
----------AACAAT
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:TCTCTGTGCAAACAAT--
---------GAACAATGG
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:TCTCTGTGCAAACAAT--
--------VRAACAATGG
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TCTCTGTGCAAACAAT-----
----TCACGGAACAATAGGTG
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TCTCTGTGCAAACAAT--
----NTTNAGAACAATTA
 A G C T A G T C A C G T A G T C A G C T A T C G A G C T A T C G A G T C C G T A G T C A C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A