Information for 11-MTTGGNCAAA (Motif 17)

T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A
Reverse Opposite:
A C G T A G C T G C A T C T A G T C G A A G T C G T A C G T C A T G C A A C G T
p-value:1e-9
log p-value:-2.185e+01
Information Content per bp:1.508
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif7.15%
Number of Background Sequences with motif347.8
Percentage of Background Sequences with motif2.76%
Average Position of motif in Targets50.6 +/- 26.2bp
Average Position of motif in Background48.4 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--MTTGGNCAAA
TGATTGGCTANN
 A C G T A C G T T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---MTTGGNCAAA---
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:MTTGGNCAAA
--TGGAAAA-
 T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:MTTGGNCAAA
-TTGGCA---
 T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:MTTGGNCAAA
--AGGTCA--
 T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:MTTGGNCAAA-----
-TGGGGCAAAGGTCA
 T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:MTTGGNCAAA-----
GTAGGGCAAAGGTCA
 T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A A C G T A C G T A C G T A C G T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---MTTGGNCAAA
CCGATTGGCT---
 A C G T A C G T A C G T T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:MTTGGNCAAA-----
-TAGGGCAAAGGTCA
 T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:MTTGGNCAAA
AATGGAAAAT
 T G C A A C G T C A G T C A T G T C A G A G C T G A T C C G T A T C G A T G C A
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T