Information for 6-CWCCCTGTCTGCCMAT (Motif 15)

A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T
Reverse Opposite:
G T C A C G A T A C G T A C T G T A C G A G T C G T C A A T C G T G C A T A G C C G T A C A T G A C T G A T C G G C T A C T A G
p-value:1e-10
log p-value:-2.342e+01
Information Content per bp:1.737
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.3 +/- 26.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT-
-------GGTGCCAAGT
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT
--VBSYGTCTGG----
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.58
Offset:8
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT
--------TTGCCAAG
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT
----CTGTCTGG----
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT
-------CGTGCCAAG
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.57
Offset:8
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT-
--------ATGCCCACC
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.57
Offset:8
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT-
--------CTGCCCGCA
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CWCCCTGTCTGCCMAT-
-----TGTCTGDCACCT
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:CWCCCTGTCTGCCMAT
---------TGCCAA-
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CWCCCTGTCTGCCMAT
CTGGCAGNCTGCCA--
 A G T C C G A T A T G C A G T C G A T C A C G T A T C G A C G T A T G C A C G T A C T G A T G C T G A C G T C A G C T A A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T