Information for 7-YMAGGRATGAATA (Motif 9)

A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C G T A T G C C G T A A G C T A G C T A G T C A G T C C G A T C A G T C T A G
p-value:1e-10
log p-value:-2.483e+01
Information Content per bp:1.883
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.2 +/- 15.0bp
Average Position of motif in Background59.7 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.72
Offset:6
Orientation:forward strand
Alignment:YMAGGRATGAATA---
------ATGAATATTC
 A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.70
Offset:6
Orientation:forward strand
Alignment:YMAGGRATGAATA---
------ATGMATATDC
 A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-YMAGGRATGAATA--
ACTATGAATGAATGAT
 A C G T A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:YMAGGRATGAATA
NCTGGAATGC---
 A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:YMAGGRATGAATA-
NNTNTCATGAATGT
 A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:YMAGGRATGAATA
--HNRAATCAAT-
 A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A
A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-YMAGGRATGAATA---
TGAAGGGATTAATCATC
 A C G T A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:8
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:YMAGGRATGAATA-
----DGATCRATAN
 A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YMAGGRATGAATA---
TGTAGGGATTAATTGTC
 A C G T A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YMAGGRATGAATA---
AGAGGGGATTAATTTAT
 A C G T A G T C G T C A C G T A A C T G A C T G C T G A C T G A A C G T A T C G C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T