Information for 4-GGAGCAGCAT (Motif 9)

A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
Reverse Opposite:
C G T A A C G T A T C G A G T C C G A T T C A G G A T C G C A T A G T C A G T C
p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.828
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif167.3
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets42.5 +/- 23.6bp
Average Position of motif in Background51.7 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAGCAT
GGGAGGACNG-
 A C G T A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGAGCAGCAT
TGGAACAGMA-
 A C G T A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAGCAT
CGGAGC-----
 A C G T A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGAGCAGCAT--
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGAGCAGCAT
----CAGCC-
 A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GGAGCAGCAT
RGKGGGCGGAGC--
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGAGCAGCAT
CCAGGAACAG---
 A C G T A C G T A C G T A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGAGCAGCAT
GGATTAGC--
 A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGAGCAGCAT-
GTACCCGCATN
 A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T A C G T
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGAGCAGCAT-
-DCTCAGCAGG
 A C T G A C T G C G T A C A T G A G T C C G T A A C T G A T G C T G C A G C A T A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G