Information for 2-CCGCCAGCTGAGGSST (Motif 5)

G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
Reverse Opposite:
T G C A A T C G A T C G A G T C A G T C A C G T A G T C C T G A A C T G G T A C A G C T A C T G C T A G T A G C A C T G A C T G
p-value:1e-14
log p-value:-3.231e+01
Information Content per bp:1.755
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.7 +/- 15.2bp
Average Position of motif in Background50.4 +/- 9.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCGCCAGCTGAGGSST
CCCCCTGCTGTG----
 G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCGCCAGCTGAGGSST
GGCCYCCTGCTGDGH---
 A C G T A C G T G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCGCCAGCTGAGGSST
GACCCCCCGCTGTG----
 A C G T A C G T G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCGCCAGCTGAGGSST
---HCAGCTGDTN---
 G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGCCAGCTGAGGSST
GACCCCCCGCTGCGC---
 A C G T A C G T G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCGCCAGCTGAGGSST
GACCCCCCGCTGTGC---
 A C G T A C G T G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCGCCAGCTGAGGSST
---CCTGCTGAGH---
 G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGCCAGCTGAGGSST
--ANCAGCTG------
 G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCGCCAGCTGAGGSST
---NCAGCTGCTG---
 G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCGCCAGCTGAGGSST
--NVCAGCTGBBNN--
 G T A C G T A C A C T G A G T C A G T C C T G A A C T G A G T C A G C T A C T G C G T A C T A G A C T G T A G C T A G C A C G T
A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T