Information for 2-TTGAGCTACAAAG (Motif 4)

A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
Reverse Opposite:
G T A C G A C T A C G T A C G T T C A G C G A T C G T A A C T G T A G C A C G T A G T C G T C A T C G A
p-value:1e-14
log p-value:-3.416e+01
Information Content per bp:1.817
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets64.6 +/- 25.5bp
Average Position of motif in Background50.6 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTGAGCTACAAAG
-TGACCTTGAT--
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTGAGCTACAAAG
ATGACCTTGAA--
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTGAGCTACAAAG
ATGACCTTGA---
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTGAGCTACAAAG
NTGACCTTGA---
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGAGCTACAAAG
GTGACCTT-----
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTGAGCTACAAAG
NATGACCTTGA---
 A C G T A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:TTGAGCTACAAAG
-------ACAAAG
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGAGCTACAAAG
-TGACCT------
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTGAGCTACAAAG-
TTGACCTANTTATN
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTGAGCTACAAAG
--CGGTTTCAAA-
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T C G T A A G T C C G T A C G T A C G T A A C T G
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T