Information for 24-GCCATTATCCTTT (Motif 35)

C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
Reverse Opposite:
T C G A T C G A C T G A C T A G T A C G T G C A C G A T T G C A T G C A C G A T C A T G C A T G G T A C
p-value:1e-7
log p-value:-1.791e+01
Information Content per bp:1.362
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.9 +/- 24.7bp
Average Position of motif in Background77.7 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCATTATCCTTT
-CCATTGTTTT--
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCATTATCCTTT
NCCATTGTTY---
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCATTATCCTTT
-YCATTAMC----
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCATTATCCTTT
-AAGATATCCTT-
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCATTATCCTTT
GGCCATTAAC----
 A C G T C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCATTATCCTTT
NCCATTGTTC---
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCATTATCCTTT
-CCATTGTTYB--
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCCATTATCCTTT
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCCATTATCCTTT
---ATTTTCCATT
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCCATTATCCTTT
---ATAATCCC--
 C A T G G A T C G T A C G C T A A C G T A C G T G C T A A C G T A T G C G A T C G A C T A G C T A G C T
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T