Information for 16-SCTGCCTRGCGYC (Motif 17)

A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C
Reverse Opposite:
A C T G C T A G A G T C A C T G A G T C A G C T C T G A A C T G A C T G A T G C C G T A A C T G A T G C
p-value:1e-9
log p-value:-2.130e+01
Information Content per bp:1.893
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.4 +/- 18.5bp
Average Position of motif in Background54.0 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:SCTGCCTRGCGYC-
-CTGTCTGTCACCT
 A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:SCTGCCTRGCGYC-----
-NNNNTTGGCGCCGANNN
 A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-SCTGCCTRGCGYC-
TGTTKCCTAGCAACM
 A C G T A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:SCTGCCTRGCGYC-----
-NNNNTTGGCGCCGANNN
 A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-SCTGCCTRGCGYC-
GYCTGGYYTNTGTCA
 A C G T A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

TFAP2C/MA0524.2/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:SCTGCCTRGCGYC-
--TGCCCTNGGGCA
 A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C A C G T
A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---SCTGCCTRGCGYC
NNACTTGCCTT-----
 A C G T A C G T A C G T A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:SCTGCCTRGCGYC-
--TGCCCTNGGGCA
 A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C A C G T
A C G T A C G T G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:SCTGCCTRGCGYC
-CTGTCTGG----
 A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:SCTGCCTRGCGYC
-TTGCCAAG----
 A T C G A G T C A C G T A T C G A G T C A G T C A G C T C T G A A C T G A G T C C T A G A G T C A G T C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T