Information for 1-YTCYGATTGGYYR (Motif 1)

A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G
Reverse Opposite:
A G T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A T A C G T G C A T C A G
p-value:1e-106
log p-value:-2.441e+02
Information Content per bp:1.664
Number of Target Sequences with motif194.0
Percentage of Target Sequences with motif22.45%
Number of Background Sequences with motif1396.9
Percentage of Background Sequences with motif3.00%
Average Position of motif in Targets51.5 +/- 22.7bp
Average Position of motif in Background49.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:YTCYGATTGGYYR
--CCGATTGGCT-
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.92
Offset:2
Orientation:reverse strand
Alignment:YTCYGATTGGYYR----
--CTGATTGGTCNATTT
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:YTCYGATTGGYYR--
---TGATTGGCTANN
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----YTCYGATTGGYYR-
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:YTCYGATTGGYYR
--TTGATTGN---
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.73
Offset:6
Orientation:forward strand
Alignment:YTCYGATTGGYYR
------TTGGCA-
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:YTCYGATTGGYYR
CNGTGATTTN---
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:YTCYGATTGGYYR
--NTAATTGG---
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:YTCYGATTGGYYR-
-----NTTGGCANN
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:YTCYGATTGGYYR
--NTAATTGG---
 A G T C A C G T A G T C A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T A C G T A C G T