Information for 5-AGAGGGCGCT (Motif 4)

T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T
Reverse Opposite:
C T G A A T C G A T G C C A T G A T G C G A T C G T A C A G C T A G T C A C G T
p-value:1e-25
log p-value:-5.762e+01
Information Content per bp:1.688
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif9.90%
Number of Background Sequences with motif1195.1
Percentage of Background Sequences with motif2.49%
Average Position of motif in Targets50.1 +/- 25.8bp
Average Position of motif in Background49.8 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCGCT----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.68
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGGCGCT-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGCGCT---
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCGCT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCGCT-----
TTGGGGGCGCCCCTAG
 A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCGCT----
ATAAGGGCGCGCGAT
 A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T A C G T A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

E2F3/MA0469.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCGCT------
AAAAATGGCGCCATTTTT
 A C G T A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCGCT
CAAGATGGCGGC
 A C G T A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCGCT----
ATAAAGGCGCGCGAT
 A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T A C G T A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

PB0010.1_Egr1_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGCGCT
ANTGCGGGGGCGGN
 A C G T A C G T A C G T A C G T T G C A T C A G C T G A C A T G C T A G T A C G G T A C T A C G T A G C G A C T
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A