Information for 4-GGCAGCATTG (Motif 3)

T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G
Reverse Opposite:
A G T C G C T A G C T A G A C T C T A G A T G C G C A T A C T G A G T C A T G C
p-value:1e-14
log p-value:-3.311e+01
Information Content per bp:1.823
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.93%
Number of Background Sequences with motif163.6
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets56.8 +/- 23.9bp
Average Position of motif in Background51.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGCATTG
TGAGTCAGCA---
 A C G T A C G T A C G T T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGCATTG-
NGTCAGCANTTT
 A C G T T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGCAGCATTG-
AGGVNCCTTTGT
 A C G T T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCAGCATTG--
---CTCATTGTC
 T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGCAGCATTG----
----CCATTGTTYB
 T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0042.1_Mafk_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGCATTG---
AAGTCAGCANTTTTN
 A C G T A C G T T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T A C G T A C G T
C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGCAGCATTG----
----CCWTTGTYYB
 T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCAGCATTG-
GTCAGCANNTN
 T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGCATTG
TNNGGGCAG-----
 A C G T A C G T A C G T A C G T T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCAGCATTG------
-NNNCCATTGTGTNAN
 T A C G C T A G A G T C C G T A A T C G G A T C C T G A C G A T C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G