Information for 6-TCCAGTGTGC (Motif 4)

A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C
Reverse Opposite:
C A T G G A T C G C T A A T G C G C T A A G T C A C G T A C T G A T C G C T G A
p-value:1e-11
log p-value:-2.715e+01
Information Content per bp:1.810
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.45%
Number of Background Sequences with motif523.5
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets45.7 +/- 29.3bp
Average Position of motif in Background49.0 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TCCAGTGTGC--
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCCAGTGTGC
NTCAAGTGG--
 A C G T A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCCAGTGTGC-
-CCATTGTTYB
 A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCCAGTGTGC
NCCATTGTTC
 A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

MTF1/MA0863.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCCAGTGTGC---
GTGCCGTGTGCAAA
 A C G T A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C A C G T A C G T A C G T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCCAGTGTGC
-CCTTTGTT-
 A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGTGTGC---
NNNCCATTGTGTNAN
 A C G T A C G T A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCCAGTGTGC
-CCATTGTTC
 A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCCAGTGTGC-
-CCWTTGTYYB
 A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCCAGTGTGC
--CTTTGT--
 A G C T A T G C A G T C C G T A T C A G C G A T A T C G C G A T C T A G G T A C
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T