Information for 4-SRTGGCAACA (Motif 2)

A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A
Reverse Opposite:
A C G T A C T G A G C T A G C T C T A G G T A C A G T C G T C A A G T C A T G C
p-value:1e-43
log p-value:-1.008e+02
Information Content per bp:1.733
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif11.42%
Number of Background Sequences with motif887.0
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets48.7 +/- 21.8bp
Average Position of motif in Background51.8 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----SRTGGCAACA
TTGCCATGGCAACN
 A C G T A C G T A C G T A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-SRTGGCAACA-
SCCTAGCAACAG
 A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----SRTGGCAACA
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----SRTGGCAACA
TTGCCATGGCAACC
 A C G T A C G T A C G T A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:SRTGGCAACA--
SCTGTCARCACC
 A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A A C G T A C G T
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---SRTGGCAACA--
TACCATAGCAACGGT
 A C G T A C G T A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----SRTGGCAACA
GTTGCCATGGCAACM
 A C G T A C G T A C G T A C G T A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:SRTGGCAACA
CTTGGCAA--
 A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--SRTGGCAACA----
ACTATGCCAACCTACC
 A C G T A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----SRTGGCAACA-
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C G T A C G T A T C G T C A G A C G T A C T G A C T G A G T C C T G A T C G A A G T C G T C A A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G