Information for 4-CTBCCCCCTGCTGVGC (Motif 5)

A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
Reverse Opposite:
C T A G A G T C A G T C A G T C C T G A A C T G A G T C C G T A A T C G C A T G C T A G A C T G C T A G T A G C C G T A A C T G
p-value:1e-12
log p-value:-2.935e+01
Information Content per bp:1.813
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.6 +/- 22.0bp
Average Position of motif in Background48.7 +/- 12.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:CTBCCCCCTGCTGVGC
---CCCCCTGCTGTG-
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTBCCCCCTGCTGVGC
-GGCCYCCTGCTGDGH
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CTBCCCCCTGCTGVGC--
---TCNCCTGCTGNGNNN
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CTBCCCCCTGCTGVGC--
---TNTCCTGCTGTGNNG
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTBCCCCCTGCTGVGC
-GACCCCCCGCTGCGC
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CTBCCCCCTGCTGVGC--
---NNTCCTGCTGTGNNN
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTBCCCCCTGCTGVGC
-GACCCCCCGCTGTG-
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.69
Offset:6
Orientation:forward strand
Alignment:CTBCCCCCTGCTGVGC
------CCTGCTGAGH
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTBCCCCCTGCTGVGC
-GACCCCCCGCTGTGC
 A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTBCCCCCTGCTGVGC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A G T C G A T C A T G C A C G T A C T G A G T C A G C T C T A G T C A G A C T G A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T