Information for 3-TGCCAACAGAGGGAGG (Motif 3)

A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G
Reverse Opposite:
A T G C A G T C A G C T A G T C A G T C A G T C A G C T A T G C A C G T A C T G A G C T A G C T A C T G A T C G A T G C C G T A
p-value:1e-21
log p-value:-4.943e+01
Information Content per bp:1.808
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.5 +/- 15.3bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGCCAACAGAGGGAGG-----
-GCCASCAGGGGGCGCYVNNG
 A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGCCAACAGAGGGAGG--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAACAGAGGGAGG---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGCCAACAGAGGGAGG
----AACAAAGG----
 A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCCAACAGAGGGAGG
ATGCCAACC--------
 A C G T A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCCAACAGAGGGAGG
TTGCCAAG---------
 A C G T A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGCCAACAGAGGGAGG
GGTGCCAAGT--------
 A C G T A C G T A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGCCAACAGAGGGAGG--
----CACAGCGGGGGGTC
 A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TGCCAACAGAGGGAGG
------AACAGGAAGT
 A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGCCAACAGAGGGAGG
----AACAGATGGT--
 A C G T A T C G A T G C G T A C C T G A C T G A G T A C C G T A A T C G C T G A A C T G A C T G C T A G T C G A A C T G A T C G
A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T