Information for 14-AGTCACAGTC (Motif 17)

C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C G T A C T G A G C T A C T G C G T A A G T C A C G T
p-value:1e-5
log p-value:-1.248e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif13.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets75.7 +/- 19.0bp
Average Position of motif in Background68.6 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGTCACAGTC-----
-GTCACGCTCNCTGA
 C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Hnf4a/MA0114.3/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTCACAGTC----
GGGGTCAAAGTCCAAT
 A C G T A C G T C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTCACAGTC
TGAGTGACAGSC
 A C G T A C G T C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGTCACAGTC
---CACAGN-
 C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTCACAGTC
AGTCACGC--
 C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGTCACAGTC
AAATCACAGCA
 A C G T C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGTCACAGTC-
AGGTGHCAGACA
 A C G T C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AGTCACAGTC
NNAATTAGTCACGGT-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGTCACAGTC
CAAATCACTG--
 A C G T A C G T C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGTCACAGTC
NATGAGTCACC---
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C C T G A A G T C C G T A A C T G A C G T A G T C
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T A C G T