Information for 9-AAATATTTGA (Motif 12)

G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A
Reverse Opposite:
C A G T A T G C C G T A C G T A C G T A A G C T C T G A C G A T A C G T C A G T
p-value:1e-8
log p-value:-2.024e+01
Information Content per bp:1.846
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif147.9
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets47.4 +/- 22.1bp
Average Position of motif in Background50.6 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----AAATATTTGA
NNTNNCAATATTAG-
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----AAATATTTGA
NNTNNCAATATTAG-
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AAATATTTGA
-AATAATT--
 G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAATATTTGA---
ATAAACAATTAAACA
 A C G T A C G T G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A A C G T A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AAATATTTGA
TATGTAAATAT----
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAATATTTGA--
GAATGTTTGTTT
 G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A A C G T A C G T
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

BHLHE23/MA0817.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAATATTTGA--
AAACATATGTTT
 G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A A C G T A C G T
C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AAATATTTGA
TATGTAAATAT----
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAATATTTGA--
TTAATGTTTAACC
 A C G T G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A A C G T A C G T
A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AAATATTTGA----
----ATTTGCATAT
 G T C A C G T A C G T A G A C T C T G A C G A T C G A T A C G T A T C G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T