Information for 5-KTGRMCTSSAGGWGCC (Motif 6)

A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G A T A G T C A G T C A C G T A T G C T A G C C G T A C A T G A C G T A G C T A G T C C G T A G T C A
p-value:1e-10
log p-value:-2.489e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.2 +/- 21.8bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KTGRMCTSSAGGWGCC----
-TGACCTAAAGTAACCTCTG
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:KTGRMCTSSAGGWGCC-
-TGACCTNTAGTAACCC
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C A C G T
A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:KTGRMCTSSAGGWGCC-
-----SDGCAGGTGCNS
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:KTGRMCTSSAGGWGCC----
-TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Vdr/MA0693.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:KTGRMCTSSAGGWGCC-
-TGAACTCNATGAACTC
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C A C G T
A C G T G A C T T C A G T G C A T G C A G A T C A G C T A G T C C T G A C T G A G A C T T C A G T G C A T G C A G T A C A G C T A G T C

RXRA::VDR/MA0074.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:KTGRMCTSSAGGWGCC
-TGAACCCGATGACCC
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C
A C G T A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:KTGRMCTSSAGGWGCC--
BTGACCTCTNNHTGACCY
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C A C G T A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:KTGRMCTSSAGGWGCC
------NNCAGGTGNN
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:KTGRMCTSSAGGWGCC
GTGACCTT--------
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:KTGRMCTSSAGGWGCC
NTGACCTTGA------
 A C G T A C G T A C T G C T G A G T C A G A T C A C G T A T C G A T C G C G T A A C T G A C T G C G T A A C T G A G T C A G T C
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T