Information for 6-CCCTACAGCATGG (Motif 4)

A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A T C G G T A C A C G T A C T G A C G T G T C A C T A G A C T G A C T G
p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.862
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.7 +/- 21.4bp
Average Position of motif in Background42.2 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCCTACAGCATGG-
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCTACAGCATGG
---CACAGN----
 A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCCTACAGCATGG-
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCCTACAGCATGG-
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCCTACAGCATGG--
---CACAGCAGGGGG
 A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCCTACAGCATGG--
CCACACAGCAGGAGA
 A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCCTACAGCATGG
-ATTGCATCAT--
 A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G
A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CCCTACAGCATGG
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCCTACAGCATGG--
CCACACAGCAGGAGA
 A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCCTACAGCATGG
TTGCCCTAGGGCAT--
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A A G T C C G T A A C T G A T G C C G T A C G A T C T A G A C T G
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T A C G T A C G T