Information for 5-TTCAGCAGGG (Motif 5)

A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G
Reverse Opposite:
A G T C G T A C A G T C A C G T A C T G G T A C G A C T A C T G C T G A C T G A
p-value:1e-13
log p-value:-3.057e+01
Information Content per bp:1.846
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif287.0
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets53.5 +/- 24.5bp
Average Position of motif in Background48.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TTCAGCAGGG--
CACAGCAGGGGG
 A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGCAGGG----
DCHCAGCAGGRGGCC
 A C G T A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGCAGGG
DCTCAGCAGG-
 A C G T A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTCAGCAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTCAGCAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTCAGCAGGG--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTCAGCAGGG
TGAGTCAGCA---
 A C G T A C G T A C G T A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTCAGCAGGG
--CAGCTGNT
 A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTCAGCAGGG-
-HCAGCTGDTN
 A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G A C G T
A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTCAGCAGGG----
CACAGCGGGGGGTC
 A G C T G A C T A G T C C T G A A C T G A G T C C G T A C T A G A C T G T C A G A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C