Information for 8-TGTATSGGAC (Motif 13)

A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C
Reverse Opposite:
A C T G C G A T A T G C T G A C A T C G C G T A A C G T T G C A A G T C C G T A
p-value:1e-9
log p-value:-2.295e+01
Information Content per bp:1.735
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif151.2
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets54.1 +/- 25.1bp
Average Position of motif in Background50.2 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGTATSGGAC--
CTGTCTGTCACCT
 A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGTATSGGAC--
TGTCTGDCACCT
 A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

DMRT3/MA0610.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGTATSGGAC
AATGTATCAAT-
 A C G T A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGTATSGGAC
CTGTCTGG---
 A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGTATSGGAC--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TGTATSGGAC-
TNNTTTCGTATTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGTATSGGAC
VBSYGTCTGG---
 A C G T A C G T A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TGTATSGGAC-
CCATTGTATGCAAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------TGTATSGGAC-
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

FOXH1/MA0479.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGTATSGGAC
TGTGGATTNNN-
 A C G T A C G T A C G T A C T G A C G T T G C A C G A T T A G C A C T G T A C G G C T A A G T C
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T