Information for 5-CAAAGGGTCANCAAAC (Motif 9)

G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A G C T C T A G C G T A C G A T T A C G C G T A G A T C A G T C A G T C A G C T A C G T A C G T A C T G
p-value:1e-13
log p-value:-3.052e+01
Information Content per bp:1.756
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.8 +/- 25.0bp
Average Position of motif in Background35.8 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg/MA0859.1/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGGTCANCAAAC
AAGGTCAAAAGGTCAA-----
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGGTCANCAAAC
RACAAWGG----------
 A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAAAGGGTCANCAAAC
TCTCAAAGGTCACGAG--
 A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CAAAGGGTCANCAAAC
AAAGGTCAAAAGGTCA------
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGGTCANCAAAC
AACAAAGG----------
 A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAAAGGGTCANCAAAC
TCTCAAAGGTCACCTG--
 A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGGTCANCAAAC
GAGGTCAAAAGGTCA------
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGGTCANCAAAC
AAAACAAAGG----------
 A C G T A C G T A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAAAGGGTCANCAAAC
--AGRGGTCA------
 G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGGTCANCAAAC
ANGNAAAGGTCA------
 A C G T A C G T G T A C C G T A C G T A C T G A C T A G C T A G C T A G A C G T A G T C C G T A A C G T A G T C C T G A G T C A C G T A A G T C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T