Information for 4-GCAGGAKGCCAGGTCS (Motif 8)

A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
Reverse Opposite:
A T G C T C A G T G C A A T G C G A T C A C G T A C T G A C T G G T A C T G C A A C G T G A T C A G T C C G A T A C T G T A G C
p-value:1e-14
log p-value:-3.268e+01
Information Content per bp:1.659
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif87.7
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets53.7 +/- 24.2bp
Average Position of motif in Background48.6 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGAKGCCAGGTCS
TGGCAGNCTGCCAG----
 A C G T A C G T A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGAKGCCAGGTCS
TTGGCANNNTGCCAAG---
 A C G T A C G T A C G T A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAGGAKGCCAGGTCS
TGGCACCATGCCAA----
 A C G T A C G T A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCAGGAKGCCAGGTCS
------TGCCAA----
 A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCAGGAKGCCAGGTCS
----CGTGCCAAG---
 A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCAGGAKGCCAGGTCS
-----TTGCCAAG---
 A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCAGGAKGCCAGGTCS
-----ATGCCAGACN-
 A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCAGGAKGCCAGGTCS
-----ATGCCAACC--
 A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GCAGGAKGCCAGGTCS
----GGTGCCAAGT--
 A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCAGGAKGCCAGGTCS---
-----ATGCCACGTCATCA
 A T C G T G A C C G T A C T A G C T A G G T C A A C G T C A T G G T A C T G A C C G T A C T A G A T C G A C G T A G T C T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A