Information for 2-CAAAGTYCAH (Motif 3)

A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T
Reverse Opposite:
C G T A C G A T C T A G C T G A G T C A G T A C G A C T G A C T A C G T T C A G
p-value:1e-42
log p-value:-9.804e+01
Information Content per bp:1.675
Number of Target Sequences with motif148.0
Percentage of Target Sequences with motif17.41%
Number of Background Sequences with motif2213.8
Percentage of Background Sequences with motif4.63%
Average Position of motif in Targets48.2 +/- 24.5bp
Average Position of motif in Background51.3 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.90
Offset:-6
Orientation:forward strand
Alignment:------CAAAGTYCAH
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.90
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGTYCAH
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CAAAGTYCAH
CAAAGGTCAG
 A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CAAAGTYCAH---
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---CAAAGTYCAH---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGTYCAH-
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CAAAGTYCAH---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CAAAGTYCAH
ANGNAAAGGTCA-
 A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGTYCAH
TAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CAAAGTYCAH
TGGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C T G A A C T G C A G T G A C T G A T C C G T A G C A T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T