Information for 19-AATTTACAGKSTW (Motif 19)

C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
Reverse Opposite:
G C A T C G T A A T G C G T C A A G T C A C G T A C T G G A C T C G T A C G T A C G T A A C G T A C G T
p-value:1e-9
log p-value:-2.119e+01
Information Content per bp:1.890
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.3 +/- 27.1bp
Average Position of motif in Background52.5 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX8/MA0868.1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AATTTACAGKSTW
AACAATGTGCAGTGTT
 A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
C G T A C G T A G T A C C T G A C G T A A C G T C T A G C G A T A C T G A G T C C G T A C A T G A C G T A C T G C G A T A G C T

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATTTACAGKSTW--
TCNCTTTACAGCGNNNT
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AATTTACAGKSTW
DGWTTTATGRCN--
 A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AATTTACAGKSTW
--TTGACAGC---
 C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AATTTACAGKSTW
TCCAATCCACA-----
 A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AATTTACAGKSTW--
TCNNTTTACAGCGNNNT
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AATTTACAGKSTW--
TCNNTTTACAGCGNNNT
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AATTTACAGKSTW
NTGATTTATGGCC--
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AATTTACAGKSTW
GAACAATTGCAGTGTT
 A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATTTACAGKSTW
BTVATTWGCATA---
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C T G A C G T A T C G A C G T C G A T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T