Information for 3-ATGATTVATGCAG (Motif 4)

C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
Reverse Opposite:
A G T C A C G T A C T G A G T C G T C A A G C T A C G T T C G A C T G A A C G T A G T C C G T A A C G T
p-value:1e-17
log p-value:-3.957e+01
Information Content per bp:1.828
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.2 +/- 16.7bp
Average Position of motif in Background17.3 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ATGATTVATGCAG
-TGATTGATGA--
 C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ATGATTVATGCAG
ATGATKGATGRC-
 C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

JDP2/MA0655.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATGATTVATGCAG
ATGACTCAT----
 C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T A C G T A C G T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATGATTVATGCAG
CATGACTCATC---
 A C G T C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGATTVATGCAG--
ATGAATWATTCATGA
 C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGATTVATGCAG
WYATGCATWATGCAT
 A C G T A C G T C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATGATTVATGCAG
ATGCATAATTCA-
 C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATGATTVATGCAG
TTTGATTGATGN--
 A C G T C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGATTVATGCAG
DATGASTCATNN--
 A C G T C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
C A T G T C G A C G A T C A T G G C T A T A G C C G A T G T A C G C T A A G C T G A T C T G A C A C G T A C G T

JUND/MA0491.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGATTVATGCAG
GGTGACTCATC---
 A C G T C G T A C G A T A C T G C G T A A G C T A C G T T G A C C T G A A C G T A C T G A G T C G T C A C T A G
C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C A C G T A C G T A C G T