Information for 3-TCAAAGTTCA (Motif 3)

C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
Reverse Opposite:
C A G T T C A G T C G A G T C A A T G C G A C T A G C T A C G T T A C G G T C A
p-value:1e-24
log p-value:-5.617e+01
Information Content per bp:1.637
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif14.84%
Number of Background Sequences with motif1771.0
Percentage of Background Sequences with motif5.41%
Average Position of motif in Targets48.7 +/- 25.9bp
Average Position of motif in Background49.4 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:forward strand
Alignment:TCAAAGTTCA-
-CAAAGGTCAG
 C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAGTTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------TCAAAGTTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGTTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGTTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TCAAAGTTCA
ANGNAAAGGTCA
 A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTTCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTTCA
GAGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTTCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTTCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T C A G T A T G C T G C A T C G A C T G A A T C G C A G T A G C T A G T C G T C A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A