Information for 7-CTAGGTCAAA (Motif 12)

A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
Reverse Opposite:
A C G T A C G T A G C T C A T G G T C A T G A C A T G C G A C T C G T A T A C G
p-value:1e-11
log p-value:-2.754e+01
Information Content per bp:1.728
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif41.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets50.8 +/- 25.9bp
Average Position of motif in Background52.3 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCAAA
ATCAAGGTCA--
 A C G T A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CTAGGTCAAA
--AGGTCA--
 A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCAAA
AAYTAGGTCA--
 A C G T A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTCAAA
TATAAGTAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTAGGTCAAA
TCAAGGTCATA
 A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTAGGTCAAA
TCAAGGTCAN-
 A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTAGGTCAAA
TCAAGGTCAT-
 A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CTAGGTCAAA---
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCAAA
BTCAAGGTCA--
 A C G T A C G T A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTAGGTCAAA
CAAGGHCANV
 A T G C G C A T C T G A A T C G A C T G A C G T G T A C C T G A T G C A T G C A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G